Summary
If you make 2,446,332 円 a year living in Japan, you will be taxed 466,540 円. That means that your net pay will be 1,979,792 円 per year, or 164,983 円 per month. Your average tax rate is 19.1% and your marginal tax rate is 20.9%. This marginal tax rate means that your immediate additional income will be taxed at this rate. For instance, an increase of 100 円 in your salary will be taxed 20.85 円, hence, your net pay will only increase by 79.15 円.
Bonus Example
A 1,000 円 bonus will generate an extra 792 円 of net incomes. A 5,000 円 bonus will generate an extra 3,958 円 of net incomes.